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Class Summary |
| AboutBoxWindow |
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| ActionConfigWindow |
Action that opens a new window and dumps the coordinates into the window. |
| ActionGraphic |
Wrapper of an etomica Action that permits it to be used as a java.awt action listener. |
| ActionHistoryWindow |
Action that opens a new window and dumps the coordinates into the window. |
| ActionVelocityWindow |
Action that opens a new window and dumps the velocities into the window. |
| BondListener |
BondListener listens for Atoms being added to the Simulation, determines
what covalent bonds (if any) apply to the new Atom and informs a BondManager
of any new bonds. |
| ColorScheme |
Class that defines the algorithm used to determine atoms colors when drawn to DisplayBox. |
| ColorScheme.Simple |
Colors all atoms with baseColor. |
| ColorSchemeByType |
Colors the atom according to the color given by its type field. |
| ColorSchemeCell |
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| ColorSchemeCollectiveAgent |
Parent class for color schemes that are best implemented by attaching colors
to all atoms at once, rather than determining the color of each as it is drawn. |
| ColorSchemeColliders |
This colorScheme acts to color differently the two atoms that are scheduled to collide next. |
| ColorSchemeCoordination |
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| ColorSchemeNeighbor |
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| ColorSchemeNull |
Does nothing at any time to set atom's color, leaving color to be set to default value. |
| ColorSchemeRandom |
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| ColorSchemeRandomByMolecule |
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| ColorSchemeTemperature |
Colors atoms according to their kinetic energy. |
| DataTagBag |
Simple class that associates a set of tags with an object (unit, label, etc) |
| DecimalSlider |
Slider that permits variation of decimal (non-integer) values. |
| DefaultToolbar |
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| Device |
Base class for all Devices. |
| Device.ActionSet |
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| DeviceBox |
A simple device the permits editing of a single value via a textbox
with an associated label. |
| DeviceBox.LabelType |
Typed constant used to indicate the type of label to be used with the display. |
| DeviceBoxValueChangedEvent |
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| DeviceButton |
Button that causes an action to be performed. |
| DeviceCheckBox |
Button that toggles a boolean value via a check box. |
| DeviceControllerButton |
Button that attaches to a controller to toggle its pause/resume state. |
| DeviceDelaySlider |
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| DeviceNSelector |
Slider that selects the number of atoms of a given species in a box. |
| DevicePlotPoints |
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| DeviceSelector |
Generic Device that has a combo box. |
| DeviceSlider |
Device the changes a property using a graphical slider, via a Modifier. |
| DeviceSpinner |
Device the changes a property using a graphical spinner, via a Modifier. |
| DeviceTable |
Presents a table of numeric properties that can be edited by typing in values. |
| DeviceTableModelGeneric |
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| DeviceTernarySelector |
Selector for fractions in a ternary system. |
| DeviceTernarySelector.MyEventManager |
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| DeviceThermoSelector |
Permits selection of temperature from a discrete set of values. |
| DeviceThermoSlider |
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| DeviceToggleButton |
Button that toggles a boolean value. |
| DeviceToggleRadioButtons |
Button that toggles a boolean value using a pair of radio buttons. |
| DeviceTrioControllerButton |
Device comprising three buttons: (1) attaches to a controller to toggle its pause/resume state;
(2)causes a reset (restart) action of simulation to be performed; (3) causes reset of meter averages
only. |
| DimensionedDoubleEditor |
Editor to set the value of a double-type property having units associated with it. |
| Display |
Superclass of all classes that display something from the simulation. |
| DisplayBox |
Displays a picture of a box, with configurations of molecules, boundaries, and other objects as appropriate, assuming 2-dimensional system. |
| DisplayBoxCanvas1D |
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| DisplayBoxCanvas2D |
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| DisplayBoxCanvasG3DSys |
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| DisplayBoxSpin2D |
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| DisplayCanvas |
Superclass for classes that display information from simulation by painting to a canvas. |
| DisplayPlot |
Class for creating a plot of simulation data. |
| DisplayPlot.DataCasterJudgeFunction |
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| DisplayPlot.PopupListener |
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| DisplayPlot.RawDataWindowOpener |
Opens a window with the raw data from a plot. |
| DisplayPolytope |
Displays a picture of a polytope. |
| DisplayPolytope.Applet |
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| DisplayPolytopeCanvas2D |
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| DisplayPolytopeCanvasG3DSys |
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| DisplayScrollingGraph |
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| DisplayTable |
Presents data in a tabular form. |
| DisplayTextBox |
A simple display of a single value in a textbox with an associated label. |
| DisplayTextBox.LabelType |
Typed constant used to indicate the type of label to be used with the display. |
| DisplayTextBoxesCAE |
Display that presents three boxes with the current value, average,
and error, respectively, given by an AccumulatorAverage. |
| DisplayTimer |
DisplayBox to present the elapsed time in a
molecular dynamics simulation. |
| EtomicaPlot |
Custom Plot subclass that allows us to sanely reset the axes autoscaling and
repaint when a hidden plot is shown (without resetting all plot parameters). |
| EtomicaTheme |
This class overrides the colors in the DefaultMetalTheme. |
| OverflowShift |
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| PropertyText |
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| SimulationGraphic |
General class for graphical presentation of the elements of a molecular simulation. |
| SimulationPanel |
Main panel used to display the graphical elements of a simulation. |