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Package etomica.config

Provides classes for specifying the arrangement of atoms and molecules in space.

See: Description

Package etomica.config Description

Provides classes for specifying the arrangement of atoms and molecules in space. Two general categories of classes are defined: Each AtomFactory holds a Conformation class that it uses to place in a standard arrangement the Atoms in the atom group it builds.

The molecules initially populating a Box have the coordinates given to them by their AtomFactory. Thus most molecules initially lie on top of one another. A Configuration must be instantiated and applied (using its initializeCoordinates method) to the Box before simulation commences.

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