Package etomica.box

Interface Summary

BoxAgentManager.BoxAgentSource	Interface for an object that makes an agent to be placed in each atom upon construction.
BoxCellManager	Interface for class that handles assignment of atoms to cells in a box.
RandomPositionSource	Interface for an object which returns random positions within a box's boundary.

Class Summary

AtomSetAllMolecules
Box	A Box collects all atoms that interact with one another; atoms in different boxs do not interact.
BoxAgentManager	BoxAgentManager acts on behalf of client classes (a BoxAgentSource) to manage agents for each Box in a simulation.
BoxAgentManager.AgentIterator	Iterator that loops over the agents, skipping null elements
BoxAgentSourceAtomManager
BoxAtomEvent	Event that conveys some happening with respect to an Atom in a Box.
BoxAtomIndexEvent	Event that conveys that the maximum global index in a Box has changed.
BoxEvent	Event that conveys some happening with respect to a box or the things it contains.
BoxEventManager
BoxGlobalAtomIndexEvent	Event that conveys that the maximum global index in a Box has changed.
BoxIndexEvent	Event that conveys that the maximum leaf index in a Box has changed (or is about to change).
BoxListenerAdapter
BoxMoleculeAddedEvent	Event that conveys that an Atom has been added to a Box.
BoxMoleculeCountEvent
BoxMoleculeEvent
BoxMoleculeIndexEvent	Event that conveys that an Atom's global index in a box has changed.
BoxMoleculeRemovedEvent	Event that conveys that an Atom has been removed from a Box.
RandomPositionSourceDeformable	Implementation of RandomPositionSource that can handle BoundaryDeformablePeriodic.
RandomPositionSourceRectangular