etomica.atom.iterator
Class AtomIteratorLeafAtoms

java.lang.Object
  etomica.atom.iterator.AtomIteratorArrayListSimple
      etomica.atom.iterator.AtomIteratorLeafAtoms

All Implemented Interfaces:

AtomIterator, AtomIteratorBoxDependent, AtomLeafsetIterator, AtomsetIterator, AtomsetIteratorBoxDependent, Serializable

Direct Known Subclasses:

AtomIteratorLeafFilteredType

public class AtomIteratorLeafAtoms
extends AtomIteratorArrayListSimple
implements AtomIteratorBoxDependent

Iterator that will loop over all leaf atoms in a box. Can be configured to iterate all leaf atoms, or only those of a particular species.

See Also:

Serialized Form

Field Summary

Fields inherited from class etomica.atom.iterator.AtomIteratorArrayListSimple

atomSetSinglet, cursor, list

Constructor Summary

AtomIteratorLeafAtoms()
Creates iterator with no box specified.

AtomIteratorLeafAtoms(IBox box)
Creates iterator conditioned to give all leaf atoms of the specified box.

Method Summary

void	setBox(IBox box) Configures iterator to form its iterates from the leaf atoms of the given box.

Methods inherited from class etomica.atom.iterator.AtomIteratorArrayListSimple

nBody, next, nextAtom, reset, setList, size, unset

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface etomica.atom.iterator.AtomIterator

nextAtom

Methods inherited from interface etomica.atom.iterator.AtomLeafsetIterator

next

Methods inherited from interface etomica.atom.iterator.AtomsetIterator

nBody, reset, size, unset

Constructor Detail

AtomIteratorLeafAtoms

public AtomIteratorLeafAtoms()

Creates iterator with no box specified. Iteration will return no atoms until a call to setBox is performed.

AtomIteratorLeafAtoms

public AtomIteratorLeafAtoms(IBox box)

Creates iterator conditioned to give all leaf atoms of the specified box. Call to reset() is required before beginning iteration.

Method Detail

setBox

public void setBox(IBox box)

Configures iterator to form its iterates from the leaf atoms of the given box. If a species was previously (or subsequently) set, iterates will be the leaf atoms of under the species in the specified box.

Specified by:

setBox in interface AtomsetIteratorBoxDependent

Throws:

a - NullPointerException if the Box is null