etomica.atom

Class AtomFilterInShape

java.lang.Object

etomica.atom.AtomFilterInShape

All Implemented Interfaces:

AtomFilter, java.io.Serializable

public class AtomFilterInShape
extends java.lang.Object
implements AtomFilter, java.io.Serializable

Filter that accepts atom if it is inside a specified Shape instance. Position of atom is determined by an AtomPositionDefinition, which if unspecified defaults for each atom to that given by the atom's type.

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
AtomFilterInShape(Shape shape) Create filter in which position definition is given by atom's type.

Method Summary

Modifier and Type	Method and Description
boolean	accept(IAtom atom) Returns true if the atom's position is inside the shape.
boolean	accept(IMolecule mole)
IAtomPositionDefinition	getPositionDefinition()
Shape	getShape()
void	setPositionDefinition(IAtomPositionDefinition positionDefinition) Sets position definition.
void	setShape(Shape shape)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AtomFilterInShape

public AtomFilterInShape(Shape shape)

Create filter in which position definition is given by atom's type.

Method Detail

accept

public boolean accept(IAtom atom)

Returns true if the atom's position is inside the shape.

Specified by:

accept in interface AtomFilter

accept

public boolean accept(IMolecule mole)

Specified by:

accept in interface AtomFilter

getShape

public Shape getShape()

Returns:

Returns the shape.

setShape

public void setShape(Shape shape)

Parameters:

shape - The shape to set.

getPositionDefinition

public IAtomPositionDefinition getPositionDefinition()

Returns:

Returns the positionDefinition.

setPositionDefinition

public void setPositionDefinition(IAtomPositionDefinition positionDefinition)

Sets position definition. If given null, positionDefinition from each atom's type will be used.

Parameters:

positionDefinition - The positionDefinition to set.